Microbiology & Pathogens
2008
Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major
Arvind K Chavali,
Jeffrey D Whittemore,
James A Eddy,
Kyle T Williams
&
Jason A Papin
doi:10.1038/msb.2008.15
Published online:
25 March 2008
Synopsis | Full Text | PDF (8,425K) | Supplementary information
Mathematical modeling of pathogenicity of Cryptococcus neoformans
Jacqueline Garcia,
John Shea,
Fernando Alvarez-Vasquez,
Asfia Qureshi,
Chiara Luberto,
Eberhard O Voit
&
Maurizio Del Poeta
doi:10.1038/msb.2008.17
Published online:
15 April 2008
Synopsis | Full Text | PDF (384K) | Supplementary information
Transient heterogeneity in extracellular protease production by Bacillus subtilis
Jan-Willem Veening,
Oleg A Igoshin,
Robyn T Eijlander,
Reindert Nijland,
Leendert W Hamoen
&
Oscar P Kuipers
doi:10.1038/msb.2008.18
Published online:
15 April 2008
Synopsis | Full Text | PDF (863K) | Supplementary information
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
Victor Kunin,
Jeroen Raes,
J Kirk Harris,
John R Spear,
Jeffrey J Walker,
Natalia Ivanova,
Christian von Mering,
Brad M Bebout,
Norman R Pace,
Peer Bork
&
Philip Hugenholtz
doi:10.1038/msb.2008.35
Published online:
03 June 2008
Full Text | PDF (341K) | Supplementary information
Top-down systems biology integration of conditional prebiotic modulated transgenomic interactions in a humanized microbiome mouse model
Francois-Pierre J Martin,
Yulan Wang,
Norbert Sprenger,
Ivan K S Yap,
Serge Rezzi,
Ziad Ramadan,
Emma Peré-Trepat,
Florence Rochat,
Christine Cherbut,
Peter van Bladeren,
Laurent B Fay,
Sunil Kochhar,
John C Lindon,
Elaine Holmes
&
Jeremy K Nicholson
doi:10.1038/msb.2008.40
Published online:
15 July 2008
Synopsis | Full Text | PDF (2,991K) | Supplementary information
Parasites lead to evolution of robustness against gene loss in host signaling networks
Marcel Salathé
&
Orkun S Soyer
doi:10.1038/msb.2008.44
Published online:
15 July 2008
Synopsis | Full Text | PDF (842K) | Supplementary information
Systemic multicompartmental effects of the gut microbiome on mouse metabolic phenotypes
Sandrine P Claus,
Tsz M Tsang,
Yulan Wang,
Olivier Cloarec,
Eleni Skordi,
François-Pierre Martin,
Serge Rezzi,
Alastair Ross,
Sunil Kochhar,
Elaine Holmes
&
Jeremy K Nicholson
doi:10.1038/msb.2008.56
Published online:
14 October 2008
Synopsis | Full Text | PDF (5,557K) | Supplementary information
The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest
Gábor Balázsi,
Allison P Heath,
Lanbo Shi
&
Maria L Gennaro
doi:10.1038/msb.2008.63
Published online:
04 November 2008
Full Text | PDF (2,790K) | Supplementary information
Hepatitis C virus infection protein network
B de Chassey,
V Navratil,
L Tafforeau,
M S Hiet,
A Aublin-Gex,
S Agaugué,
G Meiffren,
F Pradezynski,
B F Faria,
T Chantier,
M Le Breton,
J Pellet,
N Davoust,
P E Mangeot,
A Chaboud,
F Penin,
Y Jacob,
P O Vidalain,
M Vidal,
P André,
C Rabourdin-Combe
&
V Lotteau
doi:10.1038/msb.2008.66
Published online:
04 November 2008
Synopsis | Full Text | PDF (2,603K) | Supplementary information
Probiotic modulation of symbiotic gut microbial–host metabolic interactions in a humanized microbiome mouse model
Francois-Pierre J Martin,
Yulan Wang,
Norbert Sprenger,
Ivan K S Yap,
Torbjörn Lundstedt,
Per Lek,
Serge Rezzi,
Ziad Ramadan,
Peter van Bladeren,
Laurent B Fay,
Sunil Kochhar,
John C Lindon,
Elaine Holmes
&
Jeremy K Nicholson
doi:10.1038/msb4100190
Published online:
15 January 2008
Synopsis | Full Text | PDF (2,418K) | Supplementary information
2007
Noise in timing and precision of gene activities in a genetic cascade
Amnon Amir,
Oren Kobiler,
Assaf Rokney,
Amos B Oppenheim
&
Joel Stavans
doi:10.1038/msb4100113
Published online:
13 February 2007
Synopsis | Full Text | PDF (355K) | Supplementary information
Metabolic modeling of a mutualistic microbial community
Sergey Stolyar,
Steve Van Dien,
Kristina Linnea Hillesland,
Nicolas Pinel,
Thomas J Lie,
John A Leigh
&
David A Stahl
doi:10.1038/msb4100131
Published online:
13 March 2007
Synopsis | Full Text | PDF (413K) | Supplementary information
Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli
Daniel J Dwyer,
Michael A Kohanski,
Boris Hayete
&
James J Collins
doi:10.1038/msb4100135
Published online:
13 March 2007
Synopsis | Full Text | PDF (429K) | Supplementary information
The environmental fate of organic pollutants through the global microbial metabolism
Manuel J Gómez,
Florencio Pazos,
Francisco J Guijarro,
Víctor de Lorenzo
&
Alfonso Valencia
doi:10.1038/msb4100156
Published online:
05 June 2007
Synopsis | Full Text | PDF (268K) | Supplementary information
2006
Ab initio genotype–phenotype association reveals intrinsic modularity in genetic networks
Noam Slonim,
Olivier Elemento
&
Saeed Tavazoie
doi:10.1038/msb4100047
Published online:
31 January 2006
Synopsis | Full Text | PDF (2,246K) | Supplementary information
Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability
Andrew C Tolonen,
John Aach,
Debbie Lindell,
Zackary I Johnson,
Trent Rector,
Robert Steen,
George M Church
&
Sallie W Chisholm
doi:10.1038/msb4100087
Published online:
03 October 2006
Synopsis | Full Text | PDF (425K) | Supplementary information
An integrated systems approach for understanding cellular responses to gamma radiation
Kenia Whitehead,
Adrienne Kish,
Min Pan,
Amardeep Kaur,
David J Reiss,
Nichole King,
Laura Hohmann,
Jocelyne DiRuggiero
&
Nitin S Baliga
doi:10.1038/msb4100091
Published online:
12 September 2006
Full Text | PDF (423K) | Supplementary information
A stochastic model of Escherichia coli AI-2 quorum signal circuit reveals alternative synthesis pathways
Jun Li,
Liang Wang,
Yoshifumi Hashimoto,
Chen-Yu Tsao,
Thomas K Wood,
James J Valdes,
Evanghelos Zafiriou
&
William E Bentley
doi:10.1038/msb4100107
Published online:
12 December 2006
Synopsis | Full Text | PDF (386K) | Supplementary information
2005
A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli
Shiraz Kalir,
Shmoolik Mangan
&
Uri Alon
doi:10.1038/msb4100010
Published online:
29 March 2005
Synopsis | Full Text | PDF (212K)