Proteomics
2008
A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
Arun K Ramani,
Zhihua Li,
G Traver Hart,
Mark W Carlson,
Daniel R Boutz
&
Edward M Marcotte
doi:10.1038/msb.2008.19
Published online:
15 April 2008
Synopsis | Full Text | PDF (4,872K) | Supplementary information
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
Naoyuki Sugiyama,
Hirofumi Nakagami,
Keiichi Mochida,
Arsalan Daudi,
Masaru Tomita,
Ken Shirasu
&
Yasushi Ishihama
doi:10.1038/msb.2008.32
Published online:
06 May 2008
Full Text | PDF (174K) | Supplementary information
Selected reaction monitoring for quantitative proteomics: a tutorial
Vinzenz Lange,
Paola Picotti,
Bruno Domon
&
Ruedi Aebersold
doi:10.1038/msb.2008.61
Published online:
14 October 2008
Full Text | PDF (797K)
2007
Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
Michael W Schmidt,
Andres Houseman,
Alexander R Ivanov
&
Dieter A Wolf
doi:10.1038/msb4100117
Published online:
13 February 2007
Synopsis | Full Text | PDF (572K) | Supplementary information
Large-scale mapping of human protein–protein interactions by mass spectrometry
Rob M Ewing,
Peter Chu,
Fred Elisma,
Hongyan Li,
Paul Taylor,
Shane Climie,
Linda McBroom-Cerajewski,
Mark D Robinson,
Liam O'Connor,
Michael Li,
Rod Taylor,
Moyez Dharsee,
Yuen Ho,
Adrian Heilbut,
Lynda Moore,
Shudong Zhang,
Olga Ornatsky,
Yury V Bukhman,
Martin Ethier,
Yinglun Sheng,
Julian Vasilescu,
Mohamed Abu-Farha,
Jean-Philippe Lambert,
Henry S Duewel,
Ian I Stewart,
Bonnie Kuehl,
Kelly Hogue,
Karen Colwill,
Katharine Gladwish,
Brenda Muskat,
Robert Kinach,
Sally-Lin Adams,
Michael F Moran,
Gregg B Morin,
Thodoros Topaloglou
&
Daniel Figeys
doi:10.1038/msb4100134
Published online:
13 March 2007
Synopsis | Full Text | PDF (440K) | Supplementary information
Novel peptide identification from tandem mass spectra using ESTs and sequence database compression
Nathan J Edwards
doi:10.1038/msb4100142
Published online:
17 April 2007
Full Text | PDF (217K) | Supplementary information
Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes
Brian Cox,
Thomas Kislinger,
Dennis A Wigle,
Anitha Kannan,
Kevin Brown,
Tadashi Okubo,
Brigid Hogan,
Igor Jurisica,
Brendan Frey,
Janet Rossant
&
Andrew Emili
doi:10.1038/msb4100151
Published online:
08 May 2007
Synopsis | Full Text | PDF (545K) | Supplementary information
Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
Ronish Gupta,
Bart Kus,
Christopher Fladd,
James Wasmuth,
Raffi Tonikian,
Sachdev Sidhu,
Nevan J Krogan,
John Parkinson
&
Daniela Rotin
doi:10.1038/msb4100159
Published online:
05 June 2007
Synopsis | Full Text | PDF (1,549K) | Supplementary information
The protein network of bacterial motility
Seesandra V Rajagopala,
Björn Titz,
Johannes Goll,
Jodi R Parrish,
Katrin Wohlbold,
Matthew T McKevitt,
Timothy Palzkill,
Hirotada Mori,
Russell L Finley, Jr
&
Peter Uetz
doi:10.1038/msb4100166
Published online:
31 July 2007
Synopsis | Full Text | PDF (608K) | Supplementary information
PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells
Bernd Bodenmiller,
Johan Malmstrom,
Bertran Gerrits,
David Campbell,
Henry Lam,
Alexander Schmidt,
Oliver Rinner,
Lukas N Mueller,
Paul T Shannon,
Patrick G Pedrioli,
Christian Panse,
Hoo-Keun Lee,
Ralph Schlapbach
&
Ruedi Aebersold
doi:10.1038/msb4100182
Published online:
16 October 2007
Full Text | PDF (315K) | Supplementary information
2006
Proteome analysis of yeast response to various nutrient limitations
Annemieke Kolkman,
Pascale Daran-Lapujade,
Asier Fullaondo,
Maurien M A Olsthoorn,
Jack T Pronk,
Monique Slijper
&
Albert J R Heck
doi:10.1038/msb4100069
Published online:
16 May 2006
Synopsis | Full Text | PDF (743K) | Supplementary information
An integrated systems approach for understanding cellular responses to gamma radiation
Kenia Whitehead,
Adrienne Kish,
Min Pan,
Amardeep Kaur,
David J Reiss,
Nichole King,
Laura Hohmann,
Jocelyne DiRuggiero
&
Nitin S Baliga
doi:10.1038/msb4100091
Published online:
12 September 2006
Full Text | PDF (423K) | Supplementary information
Effects of HER2 overexpression on cell signaling networks governing proliferation and migration
Alejandro Wolf-Yadlin,
Neil Kumar,
Yi Zhang,
Sampsa Hautaniemi,
Muhammad Zaman,
Hyung-Do Kim,
Viara Grantcharova,
Douglas A Lauffenburger
&
Forest M White
doi:10.1038/msb4100094
Published online:
03 October 2006
Synopsis | Full Text | PDF (552K) | Supplementary information
2005
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
Andrew Keller,
Jimmy Eng,
Ning Zhang,
Xiao-jun Li
&
Ruedi Aebersold
doi:10.1038/msb4100024
Published online:
02 August 2005
Full Text | PDF (162K) | Supplementary information