Finding multiple target optimal intervention in disease-related molecular network
Kun Yang, Hongjun Bai, Qi Ouyang, Luhua Lai & Chao Tang
doi: 10.1038/msb.2008.60
Published online: 04 November 2008
Structured data
This page lists the structured data files available on the Molecular Systems Biology site.
SBML
Membrane identity and GTPase cascades regulated by toggle and cut-out switches
Perla Del Conte-Zerial, Lutz Brusch, Jochen C Rink, Claudio Collinet, Yannis Kalaidzidis, Marino Zerial & Andreas Deutsch
doi: 10.1038/msb.2008.45
Published online: 15 July 2008
A synthetic Escherichia coli predator–prey ecosystem
Frederick K Balagaddé, Hao Song, Jun Ozaki, Cynthia H Collins, Matthew Barnet, Frances H Arnold, Stephen R Quake & Lingchong You
doi: 10.1038/msb.2008.24
Published online: 15 April 2008
Transient heterogeneity in extracellular protease production by Bacillus subtilis
Jan-Willem Veening, Oleg A Igoshin, Robyn T Eijlander, Reindert Nijland, Leendert W Hamoen & Oscar P Kuipers
doi: 10.1038/msb.2008.18
Published online: 15 April 2008
Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
Mikael Rørdam Andersen, Michael Lynge Nielsen & Jens Nielsen
doi: 10.1038/msb.2008.12
Published online: 25 March 2008
Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major
Arvind K Chavali, Jeffrey D Whittemore, James A Eddy, Kyle T Williams & Jason A Papin
doi: 10.1038/msb.2008.15
Published online: 04 March 2008
A comprehensive modular map of molecular interactions in RB/E2F pathway
Laurence Calzone, Amélie Gelay, Andrei Zinovyev, François Radvanyi & Emmanuel Barillot
doi: 10.1038/msb.2008.7
Published online: 04 March 2008
Isoform switching facilitates period control in the Neurospora crassa circadian clock
Ozgur E Akman, James C W Locke, Sanyi Tang, Isabelle Carré, Andrew J Millar & David A Rand
doi: 10.1038/msb.2008.5
Published online: 12 February 2008
Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses
Marc R Birtwistle, Mariko Hatakeyama, Noriko Yumoto, Babatunde A Ogunnaike, Jan B Hoek and Boris N Kholodenko
doi: 10.1038/msb4100188
Published online: 13 November 2007
The Edinburgh human metabolic network reconstruction and its functional analysis
Hongwu Ma, Anatoly Sorokin, Alexander Mazein, Alex Selkov, Evgeni Selkov, Oleg Demin and Igor Goryanin
doi: 10.1038/msb4100177
Published online: 18 September 2007
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
Robert Schuetz, Lars Kuepfer & Uwe Sauer
doi: 10.1038/msb4100162
Published online: 10 July 2007
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis & Bernhard Ø Palsson
doi: 10.1038/msb4100155
Published online: 26 June 2007
A homeostatic model of IκB metabolism to control constitutive NF-κB activity
Ellen L O'Dea, Derren Barken, Raechel Q Peralta, Kim T Tran, Shannon L Werner, Jeffrey D Kearns, Andre Levchenko & Alexander Hoffmann
doi: 10.1038/msb4100148
Published online: 8 May 2007
Flexibility in energy metabolism supports hypoxia tolerance in Drosophila flight muscle: metabolomic and computational systems analysis
Jacob D Feala, Laurence Coquin, Andrew D McCulloch and Giovanni Paternostro
doi: 10.1038/msb4100139
Published online: 17 April 2007
A systems biology dynamical model of mammalian G1 cell cycle progression
Thomas Haberichter, Britta Mädge, Renee A Christopher, Naohisa Yoshioka, Anjali Dhiman, Robert Miller, Rina Gendelman, Sergej V Aksenov, Iya G Khalil and Steven F Dowdy
doi: 10.1038/msb4100126
Published online: 13 February 2007
A stochastic model of Escherichia coli AI-2 quorum signal circuit reveals alternative synthesis pathways
Jun Li, Liang Wang, Yoshifumi Hashimoto, Chen-Yu Tsao, Thomas K Wood, James J Valdes, Evanghelos Zafiriou and William E Bentley
doi: 10.1038/msb4100107
Published online: 12 December 2006
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana
James C W Locke, László Kozma-Bognár, Peter D Gould, Balázs Fehér, Éva Kevei, Ferenc Nagy, Matthew S Turner, Anthony Hall and Andrew J Millar
doi: 10.1038/msb4100102
Published online: 14 November 2006
A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9
Melanie N Zeilinger, Eva M Farré, Stephanie R Taylor, Steve A Kay and Francis J Doyle, III
doi: 10.1038/msb4100101
Published online: 14 November 2006
A comprehensive map of the toll-like receptor signaling network
Kanae Oda and Hiroaki Kitano
doi: 10.1038/msb4100057
Published online: 18 April 2006
Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
Adam M Feist, Johannes C M Scholten, Bernhard Ř Palsson, Fred J Brockman and Trey Ideker
doi: 10.1038/msb4100046
Published online: 31 January 2006
Extension of a genetic network model by iterative experimentation and mathematical analysis
James C W Locke, Megan M Southern, László Kozma-Bognár, Victoria Hibberd, Paul E Brown, Matthew S Turner and Andrew J Millar
doi: 10.1038/msb4100018
Published online: 28 June 2005
A comprehensive pathway map of epidermal growth factor receptor signaling
Kanae Oda, Yukiko Matsuoka, Akira Funahashi and Hiroaki Kitano
doi: 10.1038/msb4100014
Published online: 25 May 2005
