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TY  - GEN
AU  - Aichinger, I.
TI  - The Art of the Tale
PY  - 1956///
SP  - 9
EP  - 17
ER  -

TY  - JOUR
AU  - Henderson, R.
AU  - Unwin, P. N.
TI  - Three-dimensional model of purple membrane obtained by electron microscopy
JA  - Nature
PY  - 1975///
VL  - 257
SP  - 28
EP  - 32
M3  - 10.1038/257028a0
N1  - 10.1038/257028a0
UR  - http://dx.doi.org/10.1038/257028a0
ER  -

TY  - JOUR
AU  - Lenard, J.
AU  - Singer, S.
TI  - Protein conformation in cell membrane preparations as studied by optical rotatory dispersion and circular dichroism
JA  - Proc. Natl Acad. Sci. USA
PY  - 1966///
VL  - 56
SP  - 1828
EP  - 1835
ER  -

TY  - JOUR
AU  - Kyte, J.
AU  - Doolittle, R. F.
TI  - A simple method for displaying the hydropathic character of a protein
JA  - J. Mol. Biol.
PY  - 1982///
VL  - 157
SP  - 105
EP  - 132
M3  - 10.1016/0022-2836(82)90515-0
N1  - 10.1016/0022-2836(82)90515-0
UR  - http://dx.doi.org/10.1016/0022-2836(82)90515-0
ER  -

TY  - JOUR
AU  - Bigelow, H. R.
AU  - Petrey, D. S.
AU  - Liu, J.
AU  - Przybylski, D.
AU  - Rost, B.
TI  - Predicting transmembrane beta-barrels in proteomes
JA  - Nucleic Acids Res.
PY  - 2004///
VL  - 32
SP  - 2566
EP  - 2577
M3  - 10.1093/nar/gkh580
N1  - 10.1093/nar/gkh580
UR  - http://dx.doi.org/10.1093/nar/gkh580
ER  -

TY  - JOUR
AU  - White, S. H.
TI  - The progress of membrane protein structure determination
JA  - Protein Sci.
PY  - 2004///
VL  - 13
SP  - 1948
EP  - 1949
M3  - 10.1110/ps.04712004
N1  - 10.1110/ps.04712004
UR  - http://dx.doi.org/10.1110/ps.04712004
ER  -

TY  - JOUR
AU  - Fu, D.
TI  - Structure of a glycerol-conducting channel and the basis for its selectivity
JA  - Science
PY  - 2000///
VL  - 290
SP  - 481
EP  - 486
M3  - 10.1126/science.290.5491.481
N1  - 10.1126/science.290.5491.481
UR  - http://dx.doi.org/10.1126/science.290.5491.481
ER  -

TY  - JOUR
AU  - Cuthbertson, J. M.
AU  - Doyle, D. A.
AU  - Sansom, M. S.
TI  - Transmembrane helix prediction: a comparative evaluation and analysis
JA  - Protein Eng. Des. Sel.
PY  - 2005///
VL  - 18
SP  - 295
EP  - 308
M3  - 10.1093/protein/gzi032
N1  - 10.1093/protein/gzi032
UR  - http://dx.doi.org/10.1093/protein/gzi032
ER  -

TY  - JOUR
AU  - Yohannan, S.
AU  - Faham, S.
AU  - Yang, D.
AU  - Whitelegge, J. P.
AU  - Bowie, J. U.
TI  - The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors
JA  - Proc. Natl Acad. Sci. USA
PY  - 2004///
VL  - 101
SP  - 959
EP  - 963
M3  - 10.1073/pnas.0306077101
N1  - 10.1073/pnas.0306077101
UR  - http://dx.doi.org/10.1073/pnas.0306077101
ER  -

TY  - JOUR
AU  - Popot, J.
AU  - Engelman, D.
TI  - Membrane protein folding and oligomerization: the two-stage model
JA  - Biochemistry
PY  - 1990///
VL  - 29
SP  - 4031
EP  - 4037
M3  - 10.1021/bi00469a001
N1  - 10.1021/bi00469a001
UR  - http://dx.doi.org/10.1021/bi00469a001
ER  -

TY  - JOUR
AU  - White, S. H.
AU  - von Heijne, G.
TI  - The machinery of membrane protein assembly
JA  - Curr. Opin. Struct. Biol.
PY  - 2004///
VL  - 14
SP  - 397
EP  - 404
M3  - 10.1016/j.sbi.2004.07.003
N1  - 10.1016/j.sbi.2004.07.003
UR  - http://dx.doi.org/10.1016/j.sbi.2004.07.003
ER  -

TY  - JOUR
AU  - Goder, V.
AU  - Junne, T.
AU  - Spiess, M.
TI  - Sec61p contributes to signal sequence orientation according to the positive-inside rule
JA  - Mol. Biol. Cell
PY  - 2004///
VL  - 15
SP  - 1470
EP  - 1478
ER  -

TY  - JOUR
AU  - Anfinsen, C. B.
TI  - Principles that govern the folding of protein chains
JA  - Science
PY  - 1973///
VL  - 181
SP  - 223
EP  - 230
ER  -

TY  - JOUR
AU  - Engelman, D. M.
TI  - Membrane protein folding: beyond the two stage model
JA  - FEBS Lett.
PY  - 2003///
VL  - 555
SP  - 122
EP  - 125
M3  - 10.1016/S0014-5793(03)01106-2
N1  - 10.1016/S0014-5793(03)01106-2
UR  - http://dx.doi.org/10.1016/S0014-5793(03)01106-2
ER  -

TY  - JOUR
AU  - White, S. H.
AU  - Wimley, W. C.
TI  - Membrane protein folding and stability: physical principles
JA  - Annu. Rev. Biophys. Biomol. Struct.
PY  - 1999///
VL  - 28
SP  - 319
EP  - 365
M3  - 10.1146/annurev.biophys.28.1.319
N1  - 10.1146/annurev.biophys.28.1.319
UR  - http://dx.doi.org/10.1146/annurev.biophys.28.1.319
ER  -

TY  - JOUR
AU  - Tieleman, D. P.
AU  - Sansom, M. S.
AU  - Berendsen, H. J.
TI  - Alamethicin helices in a bilayer and in solution: molecular dynamics simulations
JA  - Biophys. J.
PY  - 1999///
VL  - 76
SP  - 40
EP  - 49
ER  -

TY  - JOUR
AU  - Wiener, M. C.
AU  - White, S. H.
TI  - Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of X-ray and neutron diffraction data. III. Complete structure
JA  - Biophys J.
PY  - 1992///
VL  - 61
SP  - 437
EP  - 447
ER  -

TY  - JOUR
AU  - Wimley, W. C.
AU  - Creamer, T. P.
AU  - White, S. H.
TI  - Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides
JA  - Biochemistry
PY  - 1996///
VL  - 35
SP  - 5109
EP  - 5124
M3  - 10.1021/bi9600153
N1  - 10.1021/bi9600153
UR  - http://dx.doi.org/10.1021/bi9600153
ER  -

TY  - JOUR
AU  - Liu, L. P.
AU  - Li, S. C.
AU  - Goto, N. K.
AU  - Deber, C. M.
TI  - Threshold hydrophobicity dictates helical conformations of peptides in membrane environments
JA  - Biopolymers
PY  - 1996///
VL  - 39
SP  - 465
EP  - 470
M3  - 10.1002/(SICI)1097-0282(199609)39:3<465::AID-BIP17>3.0.CO;2-A
N1  - 10.1002/(SICI)1097-0282(199609)39:3<465::AID-BIP17>3.0.CO;2-A
UR  - http://dx.doi.org/10.1002/(SICI)1097-0282(199609)39:3<465::AID-BIP17>3.0.CO;2-A
ER  -

TY  - JOUR
AU  - Hessa, T.
TI  - Recognition of transmembrane helices by the endoplasmic reticulum translocon
JA  - Nature
PY  - 2005///
VL  - 433
SP  - 377
EP  - 381
M3  - 10.1038/nature03216
N1  - 10.1038/nature03216
UR  - http://dx.doi.org/10.1038/nature03216
ER  -

TY  - JOUR
AU  - Wimley, W. C.
AU  - White, S. H.
TI  - Experimentally determined hydrophobicity scale for proteins at membrane interfaces
JA  - Nature Struct. Biol.
PY  - 1996///
VL  - 3
SP  - 842
EP  - 848
M3  - 10.1038/nsb1096-842
N1  - 10.1038/nsb1096-842
UR  - http://dx.doi.org/10.1038/nsb1096-842
ER  -

TY  - JOUR
AU  - Van den Berg, B.
TI  - X-ray structure of a protein-conducting channel
JA  - Nature
PY  - 2004///
VL  - 427
SP  - 36
EP  - 44
M3  - 10.1038/nature02218
N1  - 10.1038/nature02218
UR  - http://dx.doi.org/10.1038/nature02218
ER  -

TY  - JOUR
AU  - Rapoport, T. A.
AU  - Goder, V.
AU  - Heinrich, S. U.
AU  - Matlack, K. E.
TI  - Membrane-protein integration and the role of the translocation channel
JA  - Trends Cell Biol.
PY  - 2004///
VL  - 14
SP  - 568
EP  - 575
M3  - 10.1016/j.tcb.2004.09.002
N1  - 10.1016/j.tcb.2004.09.002
UR  - http://dx.doi.org/10.1016/j.tcb.2004.09.002
ER  -

TY  - JOUR
AU  - von Heijne, G.
TI  - The distribution of positively charged reisues in bacterial inner membrane protiens correlates with the transmembrane topology
JA  - EMBO J.
PY  - 1986///
VL  - 5
SP  - 3021
EP  - 3027
ER  -

TY  - JOUR
AU  - Heinrich, S. U.
AU  - Mothes, W.
AU  - Brunner, J.
AU  - Rapoport, T. A.
TI  - The Sec61p complex mediates the integration of a membrane protein by allowing lipid partitioning of the transmembrane domain
JA  - Cell
PY  - 2000///
VL  - 102
SP  - 233
EP  - 244
M3  - 10.1016/S0092-8674(00)00028-3
N1  - 10.1016/S0092-8674(00)00028-3
UR  - http://dx.doi.org/10.1016/S0092-8674(00)00028-3
ER  -

TY  - JOUR
AU  - Chamberlain, A. K.
AU  - Lee, Y.
AU  - Kim, S.
AU  - Bowie, J. U.
TI  - Snorkeling preferences foster an amino acid composition bias in transmembrane helices
JA  - J. Mol. Biol.
PY  - 2004///
VL  - 339
SP  - 471
EP  - 479
M3  - 10.1016/j.jmb.2004.03.072
N1  - 10.1016/j.jmb.2004.03.072
UR  - http://dx.doi.org/10.1016/j.jmb.2004.03.072
ER  -

TY  - JOUR
AU  - Hessa, T.
AU  - White, S. H.
AU  - von Heijne, G.
TI  - Membrane insertion of a potassium-channel voltage sensor
JA  - Science
PY  - 2005///
VL  - 307
SP  - 1427
M3  - 10.1126/science.1109176
N1  - 10.1126/science.1109176
UR  - http://dx.doi.org/10.1126/science.1109176
ER  -

TY  - JOUR
AU  - Nagy, J. K.
AU  - Lonzer, W. L.
AU  - Sanders, C. R.
TI  - Kinetic study of folding and misfolding of diacylglycerol kinase in model membranes
JA  - Biochemistry
PY  - 2001///
VL  - 40
SP  - 8971
EP  - 8980
M3  - 10.1021/bi010202n
N1  - 10.1021/bi010202n
UR  - http://dx.doi.org/10.1021/bi010202n
ER  -

TY  - JOUR
AU  - Zhang, W.
AU  - Campbell, H. A.
AU  - King, S. C.
AU  - Dowhan, W.
TI  - Phospholipids as determinants of membrane protein topology: Phosphatidylethanolamine is required for the proper topological organization of the gamma-aminobutyric acid permease (GabP) of Escherichia coli
JA  - J. Biol. Chem.
PY  - 2005///
VL  - 280
SP  - 26032
EP  - 26038
M3  - 10.1074/jbc.M504929200
N1  - 10.1074/jbc.M504929200
UR  - http://dx.doi.org/10.1074/jbc.M504929200
ER  -

TY  - JOUR
AU  - Dill, K. A.
AU  - Chan, H. S.
TI  - From Levinthal to pathways to funnels
JA  - Nature Struct. Biol.
PY  - 1997///
VL  - 4
SP  - 10
EP  - 19
M3  - 10.1038/nsb0197-10
N1  - 10.1038/nsb0197-10
UR  - http://dx.doi.org/10.1038/nsb0197-10
ER  -

TY  - JOUR
AU  - Lu, H.
AU  - Booth, P. J.
TI  - The final stages of folding of the membrane protein bacteriorhodopsin occur by kinetically indistinguishable parallel folding paths that are mediated by pH
JA  - J. Mol. Biol.
PY  - 2000///
VL  - 299
SP  - 233
EP  - 243
M3  - 10.1006/jmbi.2000.3735
N1  - 10.1006/jmbi.2000.3735
UR  - http://dx.doi.org/10.1006/jmbi.2000.3735
ER  -

TY  - JOUR
AU  - Bowie, J.
TI  - Helix packing in membrane proteins
JA  - J. Mol. Biol.
PY  - 1997///
VL  - 272
SP  - 780
EP  - 789
M3  - 10.1006/jmbi.1997.1279
N1  - 10.1006/jmbi.1997.1279
UR  - http://dx.doi.org/10.1006/jmbi.1997.1279
ER  -

TY  - JOUR
AU  - Huschilt, J.
AU  - Millman, B.
AU  - Davis, J.
TI  - Orientation of alpha-helical peptides in a lipid bilayer
JA  - Biochim. Biophys. Acta
PY  - 1989///
VL  - 979
SP  - 139
EP  - 141
ER  -

TY  - JOUR
AU  - Chothia, C.
AU  - Levitt, M.
AU  - Richardson, D.
TI  - Helix to helix packing in proteins
JA  - J. Mol. Biol.
PY  - 1981///
VL  - 145
SP  - 215
EP  - 250
M3  - 10.1016/0022-2836(81)90341-7
N1  - 10.1016/0022-2836(81)90341-7
UR  - http://dx.doi.org/10.1016/0022-2836(81)90341-7
ER  -

TY  - JOUR
AU  - Langosch, D.
AU  - Heringa, J.
TI  - Interaction of transmembrane helices by a knobs-into-holes packing characteristic of soluble coiled coils
JA  - Proteins
PY  - 1998///
VL  - 31
SP  - 150
EP  - 159
M3  - 10.1002/(SICI)1097-0134(19980501)31:2<150::AID-PROT5>3.3.CO;2-6
N1  - 10.1002/(SICI)1097-0134(19980501)31:2<150::AID-PROT5>3.3.CO;2-6
UR  - http://dx.doi.org/10.1002/(SICI)1097-0134(19980501)31:2<150::AID-PROT5>3.3.CO;2-6
ER  -

TY  - JOUR
AU  - Jiang, S.
AU  - Vakser, I. A.
TI  - Side chains in transmembrane helices are shorter at helix-helix interfaces
JA  - Proteins
PY  - 2000///
VL  - 40
SP  - 429
EP  - 435
M3  - 10.1002/1097-0134(20000815)40:3<429::AID-PROT80>3.0.CO;2-2
N1  - 10.1002/1097-0134(20000815)40:3<429::AID-PROT80>3.0.CO;2-2
UR  - http://dx.doi.org/10.1002/1097-0134(20000815)40:3<429::AID-PROT80>3.0.CO;2-2
ER  -

TY  - JOUR
AU  - Curran, A. R.
AU  - Engelman, D. M.
TI  - Sequence motifs, polar interactions and conformational changes in helical membrane proteins
JA  - Curr. Opin. Struct. Biol.
PY  - 2003///
VL  - 13
SP  - 412
EP  - 417
M3  - 10.1016/S0959-440X(03)00102-7
N1  - 10.1016/S0959-440X(03)00102-7
UR  - http://dx.doi.org/10.1016/S0959-440X(03)00102-7
ER  -

TY  - JOUR
AU  - Jiang, S.
AU  - Vakser, I. A.
TI  - Shorter side chains optimize helix-helix packing
JA  - Protein Sci.
PY  - 2004///
VL  - 13
SP  - 1426
EP  - 1429
M3  - 10.1110/ps.03505804
N1  - 10.1110/ps.03505804
UR  - http://dx.doi.org/10.1110/ps.03505804
ER  -

TY  - JOUR
AU  - MacKenzie, K.
AU  - Engelman, D.
TI  - Structure-based prediction of the stability of transmembrane helix-helix interactions: the sequence dependence of glycophorin A dimerization
JA  - Proc. Natl Acad. Sci. USA
PY  - 1998///
VL  - 95
SP  - 3583
EP  - 3590
M3  - 10.1073/pnas.95.7.3583
N1  - 10.1073/pnas.95.7.3583
UR  - http://dx.doi.org/10.1073/pnas.95.7.3583
ER  -

TY  - JOUR
AU  - Senes, A.
AU  - Ubarretxena-Belandia, I.
AU  - Engelman, D. M.
TI  - The C[alpha]-H.O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions
JA  - Proc. Natl Acad. Sci. USA
PY  - 2001///
VL  - 98
SP  - 9056
EP  - 9061
M3  - 10.1073/pnas.161280798
N1  - 10.1073/pnas.161280798
UR  - http://dx.doi.org/10.1073/pnas.161280798
ER  -

TY  - JOUR
AU  - Arbely, E.
AU  - Arkin, I. T.
TI  - Experimental measurement of the strength of a Calpha-H.O bond in a lipid bilayer
JA  - J. Am. Chem. Soc.
PY  - 2004///
VL  - 126
SP  - 5362
EP  - 5363
M3  - 10.1021/ja049826h
N1  - 10.1021/ja049826h
UR  - http://dx.doi.org/10.1021/ja049826h
ER  -

TY  - JOUR
AU  - Fleishman, S. J.
AU  - Ben-Tal, N.
TI  - A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices
JA  - J. Mol. Biol.
PY  - 2002///
VL  - 321
SP  - 363
EP  - 378
M3  - 10.1016/S0022-2836(02)00590-9
N1  - 10.1016/S0022-2836(02)00590-9
UR  - http://dx.doi.org/10.1016/S0022-2836(02)00590-9
ER  -

TY  - JOUR
AU  - Riek, R. P.
AU  - Rigoutsos, I.
AU  - Novotny, J.
AU  - Graham, R. M.
TI  - Non-alpha-helical elements modulate polytopic membrane protein architecture
JA  - J. Mol. Biol.
PY  - 2001///
VL  - 306
SP  - 349
EP  - 362
M3  - 10.1006/jmbi.2000.4402
N1  - 10.1006/jmbi.2000.4402
UR  - http://dx.doi.org/10.1006/jmbi.2000.4402
ER  -

TY  - JOUR
AU  - Cordes, F. S.
AU  - Bright, J. N.
AU  - Sansom, M. S.
TI  - Proline-induced distortions of transmembrane helices
JA  - J. Mol. Biol.
PY  - 2002///
VL  - 323
SP  - 951
EP  - 960
M3  - 10.1016/S0022-2836(02)01006-9
N1  - 10.1016/S0022-2836(02)01006-9
UR  - http://dx.doi.org/10.1016/S0022-2836(02)01006-9
ER  -

TY  - JOUR
AU  - Rigoutsos, I.
AU  - Riek, P.
AU  - Graham, R. M.
AU  - Novotny, J.
TI  - Structural details (kinks and non-alpha conformations) in transmembrane helices are intrahelically determined and can be predicted by sequence pattern descriptors
JA  - Nucleic Acids Res.
PY  - 2003///
VL  - 31
SP  - 4625
EP  - 4631
M3  - 10.1093/nar/gkg639
N1  - 10.1093/nar/gkg639
UR  - http://dx.doi.org/10.1093/nar/gkg639
ER  -

TY  - JOUR
AU  - Deupi, X.
TI  - Ser and Thr residues modulate the conformation of pro-kinked transmembrane alpha-helices
JA  - Biophys. J.
PY  - 2004///
VL  - 86
SP  - 105
EP  - 115
ER  -

TY  - JOUR
AU  - Wigley, W. C.
TI  - A protein sequence that can encode native structure by disfavoring alternate conformations
JA  - Nature Struct. Biol.
PY  - 2002///
VL  - 9
SP  - 381
EP  - 388
M3  - 10.1038/nsb784
N1  - 10.1038/nsb784
UR  - http://dx.doi.org/10.1038/nsb784
ER  -

TY  - JOUR
AU  - Fleming, K. G.
AU  - Engelman, D. M.
TI  - Computation and mutagenesis suggest a right-handed structure for the synaptobrevin transmembrane dimer
JA  - Proteins
PY  - 2001///
VL  - 45
SP  - 313
EP  - 317
M3  - 10.1002/prot.1151
N1  - 10.1002/prot.1151
UR  - http://dx.doi.org/10.1002/prot.1151
ER  -

TY  - JOUR
AU  - Faham, S.
TI  - Side-chain contributions to membrane protein structure and stability
JA  - J. Mol. Biol.
PY  - 2004///
VL  - 335
SP  - 297
EP  - 305
M3  - 10.1016/j.jmb.2003.10.041
N1  - 10.1016/j.jmb.2003.10.041
UR  - http://dx.doi.org/10.1016/j.jmb.2003.10.041
ER  -

TY  - JOUR
AU  - Eilers, M.
AU  - Patel, A. B.
AU  - Liu, W.
AU  - Smith, S. O.
TI  - Comparison of helix interactions in membrane and soluble alpha-bundle proteins
JA  - Biophys. J.
PY  - 2002///
VL  - 82
SP  - 2720
EP  - 2736
ER  -

TY  - JOUR
AU  - Eilers, M.
AU  - Shekar, S. C.
AU  - Shieh, T.
AU  - Smith, S. O.
AU  - Fleming, P. J.
TI  - Internal packing of helical membrane proteins
JA  - Proc. Natl Acad. Sci. USA
PY  - 2000///
VL  - 97
SP  - 5796
EP  - 5801
M3  - 10.1073/pnas.97.11.5796
N1  - 10.1073/pnas.97.11.5796
UR  - http://dx.doi.org/10.1073/pnas.97.11.5796
ER  -

TY  - JOUR
AU  - Hildebrand, P. W.
AU  - Rother, K.
AU  - Goede, A.
AU  - Preissner, R.
AU  - Frommel, C.
TI  - Molecular packing and packing defects in helical membrane proteins
JA  - Biophys. J.
PY  - 2005///
VL  - 88
SP  - 1970
EP  - 1977
ER  -

TY  - JOUR
AU  - Adamian, L.
AU  - Liang, J.
TI  - Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins
JA  - J. Mol. Biol.
PY  - 2001///
VL  - 311
SP  - 891
EP  - 907
M3  - 10.1006/jmbi.2001.4908
N1  - 10.1006/jmbi.2001.4908
UR  - http://dx.doi.org/10.1006/jmbi.2001.4908
ER  -

TY  - JOUR
AU  - Richards, F. M.
TI  - The interpretation of protein structures: total volume, group volume distributions and packing density
JA  - J. Mol. Biol.
PY  - 1974///
VL  - 82
SP  - 1
EP  - 14
M3  - 10.1016/0022-2836(74)90570-1
N1  - 10.1016/0022-2836(74)90570-1
UR  - http://dx.doi.org/10.1016/0022-2836(74)90570-1
ER  -

TY  - JOUR
AU  - Marrink, S.
AU  - Sok, R.
AU  - Berendsen, H. J.
TI  - Free volume properties of a simulated lipid membrane
JA  - J. Chem. Phys.
PY  - 1996///
VL  - 104
SP  - 9090
EP  - 9099
M3  - 10.1063/1.471442
N1  - 10.1063/1.471442
UR  - http://dx.doi.org/10.1063/1.471442
ER  -

TY  - JOUR
AU  - Rees, D.
AU  - DeAntonio, L.
AU  - Eisenberg, D.
TI  - Hydrophobic organization of membrane proteins
JA  - Science
PY  - 1989///
VL  - 245
SP  - 510
EP  - 513
ER  -

TY  - JOUR
AU  - Adamian, L.
AU  - Liang, J.
TI  - Interhelical hydrogen bonds and spatial motifs in membrane proteins: polar clamps and serine zippers
JA  - Proteins
PY  - 2002///
VL  - 47
SP  - 209
EP  - 218
M3  - 10.1002/prot.10071
N1  - 10.1002/prot.10071
UR  - http://dx.doi.org/10.1002/prot.10071
ER  -

TY  - JOUR
AU  - Chamberlain, A. K.
AU  - Faham, S.
AU  - Yohannan, S.
AU  - Bowie, J. U.
TI  - Construction of helix-bundle membrane proteins
JA  - Adv. Protein Chem.
PY  - 2003///
VL  - 63
SP  - 19
EP  - 46
M3  - 10.1016/S0065-3233(03)63002-0
N1  - 10.1016/S0065-3233(03)63002-0
UR  - http://dx.doi.org/10.1016/S0065-3233(03)63002-0
ER  -

TY  - JOUR
AU  - Lear, J. D.
AU  - Gratkowski, H.
AU  - Adamian, L.
AU  - Liang, J.
AU  - DeGrado, W. F.
TI  - Position-dependence of stabilizing polar interactions of asparagine in transmembrane helical bundles
JA  - Biochemistry
PY  - 2003///
VL  - 42
SP  - 6400
EP  - 6407
M3  - 10.1021/bi020573j
N1  - 10.1021/bi020573j
UR  - http://dx.doi.org/10.1021/bi020573j
ER  -

TY  - JOUR
AU  - Zhou, F. X.
AU  - Merianos, H. J.
AU  - Brunger, A. T.
AU  - Engelman, D. M.
TI  - Polar residues drive association of polyleucine transmembrane helices
JA  - Proc. Natl Acad. Sci. USA
PY  - 2001///
VL  - 98
SP  - 2250
EP  - 2255
M3  - 10.1073/pnas.041593698
N1  - 10.1073/pnas.041593698
UR  - http://dx.doi.org/10.1073/pnas.041593698
ER  -

TY  - JOUR
AU  - Choma, C.
AU  - Gratkowski, H.
AU  - Lear, J. D.
AU  - DeGrado, W. F.
TI  - Asparagine-mediated self-association of a model transmembrane helix
JA  - Nature Struct. Biol.
PY  - 2000///
VL  - 7
SP  - 161
EP  - 166
M3  - 10.1038/72440
N1  - 10.1038/72440
UR  - http://dx.doi.org/10.1038/72440
ER  -

TY  - JOUR
AU  - Li, R.
TI  - Activation of integrin [alpha]IIb[beta]3 by modulation of transmembrane helix associations
JA  - Science
PY  - 2003///
VL  - 300
SP  - 795
EP  - 798
M3  - 10.1126/science.1079441
N1  - 10.1126/science.1079441
UR  - http://dx.doi.org/10.1126/science.1079441
ER  -

TY  - JOUR
AU  - Gratkowski, H.
AU  - Lear, J. D.
AU  - DeGrado, W. F.
TI  - Polar side chains drive the association of model transmembrane peptides
JA  - Proc. Natl Acad. Sci. USA
PY  - 2001///
VL  - 98
SP  - 880
EP  - 885
M3  - 10.1073/pnas.98.3.880
N1  - 10.1073/pnas.98.3.880
UR  - http://dx.doi.org/10.1073/pnas.98.3.880
ER  -

TY  - JOUR
AU  - Zhou, F. X.
AU  - Cocco, M. J.
AU  - Russ, W. P.
AU  - Brunger, A. T.
AU  - Engelman, D. M.
TI  - Interhelical hydrogen bonding drives strong interactions in membrane proteins
JA  - Nature Struct. Biol.
PY  - 2000///
VL  - 7
SP  - 154
EP  - 160
M3  - 10.1038/72430
N1  - 10.1038/72430
UR  - http://dx.doi.org/10.1038/72430
ER  -

TY  - JOUR
AU  - Partridge, A. W.
AU  - Therien, A. G.
AU  - Deber, C. M.
TI  - Missense mutations in transmembrane domains of proteins: phenotypic propensity of polar residues for human disease
JA  - Proteins
PY  - 2004///
VL  - 54
SP  - 648
EP  - 656
M3  - 10.1002/prot.10611
N1  - 10.1002/prot.10611
UR  - http://dx.doi.org/10.1002/prot.10611
ER  -

TY  - JOUR
AU  - Smith, S.
AU  - Smith, C.
AU  - Bormann, B.
TI  - Strong hydrogen bonding interactions involving a buried glutamic acid in the transmembrane sequence of the neu/erbB-2 receptor
JA  - Nature Struct. Biol.
PY  - 1996///
VL  - 3
SP  - 252
EP  - 258
M3  - 10.1038/nsb0396-252
N1  - 10.1038/nsb0396-252
UR  - http://dx.doi.org/10.1038/nsb0396-252
ER  -

TY  - JOUR
AU  - Weiner, D.
AU  - Liu, J.
AU  - Cohen, J.
AU  - Williams, W. V.
AU  - Green, M.
TI  - A point mutation in the neu oncogene mimics ligand induction of receptor aggregation
JA  - Nature
PY  - 1989///
VL  - 339
SP  - 230
EP  - 231
M3  - 10.1038/339230a0
N1  - 10.1038/339230a0
UR  - http://dx.doi.org/10.1038/339230a0
ER  -

TY  - JOUR
AU  - Therien, A. G.
AU  - Grant, F. E.
AU  - Deber, C. M.
TI  - Interhelical hydrogen bonds in the CFTR membrane domain
JA  - Nature Struct. Biol.
PY  - 2001///
VL  - 8
SP  - 597
EP  - 601
M3  - 10.1038/89631
N1  - 10.1038/89631
UR  - http://dx.doi.org/10.1038/89631
ER  -

TY  - JOUR
AU  - Vargas, R.
AU  - Garza, J.
AU  - Dixon, D. A.
AU  - Hay, B. P.
TI  - How strong is the C[alpha]-H[middot][middot][middot]O=C hydrogen bond?
JA  - J. Am. Chem. Soc.
PY  - 2000///
VL  - 122
SP  - 4750
EP  - 4755
M3  - 10.1021/ja993600a
N1  - 10.1021/ja993600a
UR  - http://dx.doi.org/10.1021/ja993600a
ER  -

TY  - JOUR
AU  - Yohannan, S.
TI  - A C[alpha]-H.O hydrogen bond in a membrane protein is not stabilizing
JA  - J. Am. Chem. Soc.
PY  - 2004///
VL  - 126
SP  - 2284
EP  - 2285
M3  - 10.1021/ja0317574
N1  - 10.1021/ja0317574
UR  - http://dx.doi.org/10.1021/ja0317574
ER  -

TY  - JOUR
AU  - Mottamal, M.
AU  - Lazaridis, T.
TI  - The contribution of C[alpha]-H.O hydrogen bonds to membrane protein stability depends on the position of the amide
JA  - Biochemistry
PY  - 2005///
VL  - 44
SP  - 1607
EP  - 1613
M3  - 10.1021/bi048065s
N1  - 10.1021/bi048065s
UR  - http://dx.doi.org/10.1021/bi048065s
ER  -

TY  - JOUR
AU  - Lee, A. G.
TI  - How lipids affect the activities of integral membrane proteins
JA  - Biochim. Biophys. Acta
PY  - 2004///
VL  - 1666
SP  - 62
EP  - 87
ER  -

TY  - JOUR
AU  - Gruner, S. M.
TI  - Intrinsic curvature hypothesis for biomembrane lipid composition: a role for nonbilayer lipids
JA  - Proc. Natl Acad. Sci. USA
PY  - 1985///
VL  - 82
SP  - 3665
EP  - 3669
ER  -

TY  - JOUR
AU  - Hong, H.
AU  - Tamm, L. K.
TI  - Elastic coupling of integral membrane protein stability to lipid bilayer forces
JA  - Proc. Natl Acad. Sci. USA
PY  - 2004///
VL  - 101
SP  - 4065
EP  - 4070
M3  - 10.1073/pnas.0400358101
N1  - 10.1073/pnas.0400358101
UR  - http://dx.doi.org/10.1073/pnas.0400358101
ER  -

TY  - JOUR
AU  - Allen, S. J.
AU  - Curran, A. R.
AU  - Templer, R. H.
AU  - Meijberg, W.
AU  - Booth, P. J.
TI  - Controlling the folding efficiency of an integral membrane protein
JA  - J. Mol. Biol.
PY  - 2004///
VL  - 342
SP  - 1293
EP  - 1304
M3  - 10.1016/j.jmb.2004.07.041
N1  - 10.1016/j.jmb.2004.07.041
UR  - http://dx.doi.org/10.1016/j.jmb.2004.07.041
ER  -

TY  - JOUR
AU  - O'Keeffe, A. H.
AU  - East, J. M.
AU  - Lee, A. G.
TI  - Selectivity in lipid binding to the bacterial outer membrane protein OmpF
JA  - Biophys. J.
PY  - 2000///
VL  - 79
SP  - 2066
EP  - 2074
ER  -

TY  - JOUR
AU  - Williamson, I. M.
AU  - Alvis, S. J.
AU  - East, J. M.
AU  - Lee, A. G.
TI  - Interactions of phospholipids with the potassium channel KcsA
JA  - Biophys. J.
PY  - 2002///
VL  - 83
SP  - 2026
EP  - 2038
ER  -

TY  - JOUR
AU  - Powl, A. M.
AU  - East, J. M.
AU  - Lee, A. G.
TI  - Lipid-protein interactions studied by introduction of a tryptophan residue: the mechanosensitive channel MscL
JA  - Biochemistry
PY  - 2003///
VL  - 42
SP  - 14306
EP  - 14317
M3  - 10.1021/bi034995k
N1  - 10.1021/bi034995k
UR  - http://dx.doi.org/10.1021/bi034995k
ER  -

TY  - JOUR
AU  - Mitra, K.
AU  - Ubarretxena-Belandia, I.
AU  - Taguchi, T.
AU  - Warren, G.
AU  - Engelman, D. M.
TI  - Modulation of the bilayer thickness of exocytic pathway membranes by membrane proteins rather than cholesterol
JA  - Proc. Natl Acad. Sci. USA
PY  - 2004///
VL  - 101
SP  - 4083
EP  - 4088
M3  - 10.1073/pnas.0307332101
N1  - 10.1073/pnas.0307332101
UR  - http://dx.doi.org/10.1073/pnas.0307332101
ER  -

TY  - JOUR
AU  - Abramovitch, D. A.
AU  - Marsh, D.
AU  - Powell, G. L.
TI  - Activation of beef-heart cytochrome c oxidase by cardiolipin and analogues of cardiolipin
JA  - Biochim. Biophys. Acta
PY  - 1990///
VL  - 1020
SP  - 34
EP  - 42
ER  -

TY  - JOUR
AU  - Valiyaveetil, F. I.
AU  - Zhou, Y.
AU  - MacKinnon, R.
TI  - Lipids in the structure, folding, and function of the KcsA K+ channel
JA  - Biochemistry
PY  - 2002///
VL  - 41
SP  - 10771
EP  - 10777
M3  - 10.1021/bi026215y
N1  - 10.1021/bi026215y
UR  - http://dx.doi.org/10.1021/bi026215y
ER  -

TY  - JOUR
AU  - Schonbrun, J.
AU  - Wedemeyer, W. J.
AU  - Baker, D.
TI  - Protein structure prediction in 2002
JA  - Curr. Opin. Struct. Biol.
PY  - 2002///
VL  - 12
SP  - 348
EP  - 354
M3  - 10.1016/S0959-440X(02)00336-6
N1  - 10.1016/S0959-440X(02)00336-6
UR  - http://dx.doi.org/10.1016/S0959-440X(02)00336-6
ER  -

TY  - JOUR
AU  - Briggs, J. A.
AU  - Torres, J.
AU  - Arkin, I. T.
TI  - A new method to model membrane protein structure based on silent amino acid substitutions
JA  - Proteins
PY  - 2001///
VL  - 44
SP  - 370
EP  - 375
M3  - 10.1002/prot.1102
N1  - 10.1002/prot.1102
UR  - http://dx.doi.org/10.1002/prot.1102
ER  -

TY  - JOUR
AU  - Kim, S.
AU  - Chamberlain, A. K.
AU  - Bowie, J. U.
TI  - Membrane channel structure of Helicobacter pylori vacuolating toxin: role of multiple GXXXG motifs in cylindrical channels
JA  - Proc. Natl Acad. Sci. USA
PY  - 2004///
VL  - 101
SP  - 5988
EP  - 5991
M3  - 10.1073/pnas.0308694101
N1  - 10.1073/pnas.0308694101
UR  - http://dx.doi.org/10.1073/pnas.0308694101
ER  -

TY  - JOUR
AU  - Sale, K.
AU  - Faulon, J. L.
AU  - Gray, G. A.
AU  - Schoeniger, J. S.
AU  - Young, M. M.
TI  - Optimal bundling of transmembrane helices using sparse distance constraints
JA  - Protein Sci.
PY  - 2004///
VL  - 13
SP  - 2613
EP  - 2627
M3  - 10.1110/ps.04781504
N1  - 10.1110/ps.04781504
UR  - http://dx.doi.org/10.1110/ps.04781504
ER  -

TY  - JOUR
AU  - Adams, P.
AU  - Engelman, D.
AU  - Brunger, A.
TI  - Improved prediction fo the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching
JA  - Proteins Struct. Func. Genet.
PY  - 1996///
VL  - 26
SP  - 257
EP  - 261
ER  -

TY  - JOUR
AU  - Fleishman, S. J.
AU  - Unger, V. M.
AU  - Yeager, M.
AU  - Ben-Tal, N.
TI  - A C[alpha] model for the transmembrane alpha helices of gap junction intercellular channels
JA  - Mol. Cell
PY  - 2004///
VL  - 15
SP  - 879
EP  - 888
M3  - 10.1016/j.molcel.2004.08.016
N1  - 10.1016/j.molcel.2004.08.016
UR  - http://dx.doi.org/10.1016/j.molcel.2004.08.016
ER  -

TY  - JOUR
AU  - White, S. H.
AU  - Wimley, W. C.
TI  - Hydrophobic interactions of peptides with membrane interfaces
JA  - Biochim. Biophys. Acta
PY  - 1998///
VL  - 1376
SP  - 339
EP  - 352
M3  - 10.1016/S0304-4157(98)00021-5
N1  - 10.1016/S0304-4157(98)00021-5
UR  - http://dx.doi.org/10.1016/S0304-4157(98)00021-5
ER  -

TY  - JOUR
AU  - MacKenzie, K.
AU  - Prestegard, J.
AU  - Engelman, D.
TI  - A transmembrane helix dimer: structure and implications
JA  - Science
PY  - 1997///
VL  - 276
SP  - 131
EP  - 133
M3  - 10.1126/science.276.5309.131
N1  - 10.1126/science.276.5309.131
UR  - http://dx.doi.org/10.1126/science.276.5309.131
ER  -